Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs72725959 chr14:74576048 A/G 5.67E-7 175 25.4 27.43 7.4 KM Plot
PCPG rs72763622 chr1:244158180 G/A 2.93E-5 174 27.47 20.17 9.48 KM Plot
PCPG rs72763623 chr1:244158352 G/C 2.93E-5 174 27.47 20.17 9.48 KM Plot
PCPG rs72774968 chr2:2741684 C/G 3.17E-5 174 25.67 23.43 21.68 KM Plot
PCPG rs72774971 chr2:2746932 G/A 3.49E-5 173 25.6 23.43 21.68 KM Plot
PCPG rs72774972 chr2:2747133 C/T 3.49E-5 173 25.6 23.43 21.68 KM Plot
PCPG rs72774974 chr2:2748946 G/A 4.24E-5 171 25.47 23.43 21.68 KM Plot
PCPG rs72774975 chr2:2748955 G/A 3.49E-5 173 25.6 23.43 21.68 KM Plot
PCPG rs72774977 chr2:2750446 G/A 3.68E-5 172 25.67 23.43 21.68 KM Plot
PCPG rs72774980 chr2:2750553 G/A 3.68E-5 172 25.67 23.43 21.68 KM Plot
PCPG rs7279648 chr21:38480363 C/T 5.36E-6 176 25.17 25.87 3.7 KM Plot
PCPG rs72797610 chr16:85226678 A/T 1.73E-7 170 25.67 24.23 17.43 KM Plot
PCPG rs72797612 chr16:85228281 A/C 6.0E-5 170 25.47 32.6 15.8 KM Plot
PCPG rs72797752 chr16:71589107 C/T 1.06E-5 173 24.85 30.93 14.5 KM Plot
PCPG rs72797754 chr16:71594435 G/T 1.06E-5 173 24.85 30.93 14.5 KM Plot